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PLOS Water

Public Library of Science (PLoS)

Preprints posted in the last 30 days, ranked by how well they match PLOS Water's content profile, based on 11 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Bacteriological contamination of drinking water from source to point of consumption in Ivorian households: a nationwide analysis of the 2021 Demographic and Health Survey

KONAN, L. G.; Eugene, K. Y.; Tecthi, O.; Victoire, I.; Audrey, A.; Elvis, S. A. G. F.; Constant, K. K.; Jennifer, L. B. D.; Odile, A.-T.

2026-05-21 public and global health 10.64898/2026.05.18.26353533 medRxiv
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Background Bacteriological contamination of drinking water remains a major public health burden in sub-Saharan Africa, yet the full contamination chain from source to household has rarely been quantified at national scale. This study analyses water quality at both levels using the 2021 Cote d'Ivoire Demographic and Health Survey (DHS-CI 2021). Methods Cross-sectional secondary analysis of DHS-CI 2021 data. Households with paired bacteriological tests at the source (SH3227) and at the household (SH3225) were included (n = 2,541 for determinants; n = 2,528 for chain analysis). Contamination was defined as >0 CFU/100 ml. Determinants of source contamination were assessed by weighted logistic regression accounting for complex survey design. The contamination chain was described across four categories: safe throughout, recontaminated during transport/storage, decontaminated at home, and contaminated throughout. Results Weighted prevalence of source contamination was 63.6% [95% CI: 60.7-66.5%] and 77.0% [74.1-79.9%] at the household. Only 15.0% of households had safe water throughout the chain; 21.2% showed domestic recontamination and 60.8% consumed water contaminated at both levels. Key determinants of source contamination were use of an unimproved source (aOR = 8.15; 95% CI: 4.54-14.66), administrative region, travel time [≤]30 minutes (aOR = 1.92; 95% CI: 1.41-2.62), and higher wealth quintiles (protective; aOR = 0.25 for richest). Model discrimination was good (AUC = 0.809). Conclusions The vast majority of Ivorian households consume bacteriologically unsafe water, with domestic recontamination representing a distinct and significant degradation pathway even among users of improved sources. Dual interventions targeting source protection and safe household water storage are urgently needed to advance progress toward SDG 6 in Cote d'Ivoire.

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Bacteroidales on Harvesters: Baseline Prevalence and Abundance

Kaur, S.; Wang, J.; Kayabasi, A.; Rath, I.; Benschikovski, I.; Raut, B.; Ra, K.; Verma, M. S.

2026-05-15 bioengineering 10.64898/2026.05.12.724369 medRxiv
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Fresh produce encounters pathogens at various stages of production and supply, with the harvesting process serving as one of these stages. To evaluate contamination associated with harvesting, we systematically swabbed zone 1 harvester surfaces and quantified Bacteroidales as a fecal biomarker using quantitative polymerase chain reaction (qPCR). Baseline contamination was dominated by non-detects, with occasional low-level detections (<25 copies/cm2) near the assay limit of detection (LoD). Detection occurred more frequently post-harvest (overall [~]4% pre-harvest and 10% post-harvest), while microbial loads remained low, indicating that harvesting primarily affected the likelihood of low-level contamination rather than increasing contamination abundance. Additionally, we developed and field-deployed a portable loop- mediated isothermal amplification (LAMP) assay for rapid harvester hygiene assessment and benchmarked its field performance against qPCR. Together, these results support a practical molecular tool for monitoring fecal contamination and informing cleaning and sanitization decisions.

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How public health decision-makers operationalise wastewater surveillance: a multi-region qualitative study

Zakaria, S.; Willis, H.; Friedman, C.; Yousif, M.; Faherty, L.; Knox, N.; McCarthy, K.; Aveggio, C.; Roberts, D.; Williams, A.; Popescu, S.; Nolan, M.; Gresh, L.; Mendez Rico, J. A.

2026-05-19 public and global health 10.64898/2026.05.14.26353119 medRxiv
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Background: Wastewater and environmental surveillance (WES) expanded rapidly during the COVID-19 pandemic and is increasingly proposed for routine public health use across a broader range of pathogens. Yet empirical evidence on how decision-makers judge when WES is actionable, how it integrates with existing surveillance, and how its role varies across resource and epidemiological contexts remains limited. Methods: We conducted three structured tabletop exercises (TTXs) at regional Global Wastewater Surveillance Consortium (GLOWACON) meetings in Singapore, Ethiopia, and Panama between March 2024 and May 2025, engaging more than 1,100 participants from over 60 countries spanning public health, government, research, industry, and international organisations. Standardised scenarios and decision prompts, covering respiratory, contact-transmitted, and vector-borne pathogens across multiple outbreak phases, elicited how participants prioritised, implemented, and responded to WES. Data from structured observation notes, participant worksheets, and post-exercise surveys were systematically analysed using a thematic qualitative approach to identify cross-cutting decision patterns and context-specific considerations across regions. This working paper has not been peer reviewed. Findings: Four cross-cutting decision patterns emerged. First, WES was most actionable when it addressed defined surveillance gaps, particularly during early outbreak phases when clinical testing was limited or delayed. Second, decisions to initiate, scale, or de-escalate WES depended on disease severity, the availability of actionable interventions, and the completeness of existing surveillance, not on pathogen type. Third, participants consistently treated WES as complementary to, not a substitute for, clinical and epidemiological surveillance, with its role evolving over the course of an outbreak. Fourth, implementation considerations, including sewer infrastructure, resource constraints, tourism, and mass gatherings varied substantially by setting, while governance, data-sharing, and trust concerns recurred across all three regions. Interpretation: The value of WES is determined less by pathogen-specific characteristics than by how it is embedded within decision-making frameworks in public health systems. These findings provide empirical evidence on how WES is operationalised across diverse global contexts and underscore an urgent need for clearer governance, integration, and prioritisation frameworks without which WES risks remaining an underutilised or inconsistently applied tool despite its demonstrated potential to strengthen pandemic preparedness and response. Funding: This working paper was independently initiated and conducted within the Center on AI, Security, and Technology using income from operations and gifts and grants from philanthropic supporters. A complete list of donors and funders is available at www.rand.org/CAST. RAND clients, donors, and grantors have no influence over research findings or recommendations.

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Prospective metagenomic sequencing of wastewater across the United States yields robust viral enrichment and concordance with digital PCR measurements

Wolfe, M. K.; North, D.; Jaffe, A.; Zulli, A.; Duong, D.; Hughes, B.; Goldman, M.; Richardson, M.; Thana, P.; Chan-Herur, V.; Kheradpour, P.; Bidwell, A. L.; Hilton, S. P.; Conforti, S.; Paulos, A. P.; Boehm, A.

2026-05-08 public and global health 10.64898/2026.05.07.26352651 medRxiv
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Metagenomic sequencing is increasingly applied to wastewater to characterize the diversity, dynamics, and relative abundance of human and animal viruses. Among these sequencing approaches are those that enrich viral nucleic acids from the wastewater matrix, aiming to increase the viral read fraction for analysis. However, the feasibility of scaling targeted viral sequencing to diverse sewersheds across large geographic scales is currently unknown. In this study, we apply hybrid capture metagenomic sequencing to nearly 450 weekly wastewater samples collected during the respiratory virus season in the United States and evaluate sequencing performance for generating public health-relevant data. Analysis of data from 15 wastewater treatment plants demonstrates that our approach enabled efficient capture of pathogens of interest, achieving a median viral read fraction over 19%. Importantly, relative abundance estimates of common pathogens correlated with direct quantification of viral targets using RT-ddPCR. Together, our results demonstrate that hybrid capture sequencing of wastewater is a viable tool to monitor both common and rare pathogens across geographically diverse sewersheds.

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Zoonotic and Avian Pathogen Detections in Fecal and Sediment Samples - A Low-risk, High-throughput One Health Approach to Surveillance

Rzeszutek, G. J.; Wight, J.; Jafri, M. S.; Erwin, A. J.; Hiebert, M.; Harrigan, R.; Halbrook, M.; Hoff, N. A.; Bogoch, I. I.; Rimoin, A.; Kindrachuk, J.; Wallace, H. L.

2026-05-06 microbiology 10.64898/2025.12.19.694637 medRxiv
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Many pathogens, both those with human spillover potential as well as avian-specific viruses, are maintained in wild bird populations. While routine surveillance for influenza A viruses (IAVs) is performed annually, surveillance for other pathogens is limited. Sampling of wild birds is time-consuming, labour-intensive, often limited in sample size, and involves handling of wild and potentially infected birds, posing an increased risk of direct exposure for personnel. Additional methods for surveillance are needed given these significant challenges. Longitudinal fecal and sediment sampling was performed at various sites in southern Manitoba, Canada, particularly focused in Winnipeg from May to October 2025. Sites were chosen based on the suitability of the area for waterfowl habitat, the presence of waterfowl in the area, as well as proximity to reported outbreaks of H5N1 influenza virus. Fecal and sediment samples were collected and screened for the presence of influenza A virus (IAV), Newcastle disease virus (NDV), avian reovirus (ARV), and avian poxvirus (APXV). In total, 782 combined fecal and sediment samples were collected. Of the 714 fecal samples, 34 tested positive for IAV RNA (4.8% prevalence). None of the IAV-positive fecal samples tested positive for H5 RNA. Of the 68 sediments, 15 were positive for IAV RNA (22.1% prevalence), four of which were positive for H5 RNA. NDV RNA positivity was low, with only four positive fecal samples (0.6% prevalence) that were all collected on the same day. ARV RNA positivity was also low, with five positive sediment samples (7.4% prevalence in sediment samples). None of the samples tested positive for APXV DNA. This study builds on previous work showing the utility of environmental sampling for a variety of avian and zoonotic pathogens using a One Health approach that is low-risk, efficient, and high-throughput.

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Computational framework for the World Health Organization estimates of the global, regional and national burden of foodborne diseases 2026 edition

Devleesschauwer, B.; Vaes, L.; Fernandez, K.; Borghi, E.; Cao, B.; Fastl, C.; Jakobsen, L. S.; Kumapley, R.; Lake, R. J.; Majowicz, S. E.; Minato, Y.; Pires, S. M.; Mughini-Gras, L.; Nane, G. F.; Robertson, L.; Scallan Walter, E.; Torgerson, P. R.; Kretzschmar, M. E.; di Bari, C.

2026-05-17 public and global health 10.64898/2026.05.13.26353030 medRxiv
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Background Foodborne diseases cause substantial global morbidity and mortality, yet remain largely unattended. To support countries to address this public health concern, the World Health Assembly Resolution 73.5 called for strengthening global food safety efforts and led to the development of the WHO Global Strategy for Food Safety 2022-2030, adopted at the 75th WHA (2022). To this end, the World Health Organization (WHO) reconvened the Foodborne Disease Burden Epidemiology Reference Group (FERG) to advise and support the work to generate updated global, regional, and national estimates of the foodborne disease burden for the reference period 2000-2021. Methods We developed an incidence-based framework expanding coverage to 42 foodborne hazards. Standardized systematic reviews, Global Health Estimates and Global Burden of Disease envelopes, and United Nations population data informed the evidence base. Missing epidemiological data were imputed using Bayesian hierarchical meta-regression models. Disease models mapped acute and chronic health outcomes, applying updated disability weights, life tables, and probabilistic Monte Carlo calculations to estimate incidence, mortality, Years Lived with Disability, Years of Life Lost and Disability-Adjusted Life Years for all 194 WHO Member States. Transparency and analysis reproducibility were ensured through availed open-source R packages and standardized workflows. Results The computational framework provides annual, country-level estimates with improved internal consistency and an expanded hazard scope compared with the WHO 2015 edition. Advances include refined modelling, enhanced uncertainty propagation, and broader inclusion of microbial, parasitic, and chemical hazards. Persistent data gaps---especially in high-burden regions---were filled through extensive imputation. Conclusions The computational framework for the WHO 2026 edition delivers the most comprehensive and transparent assessment of the global burden of foodborne diseases to date. Despite remaining limitations, it enables routine monitoring, supports evaluation of global food safety efforts, and highlights priorities for strengthening national data systems.

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Predicting the median lifespan of ITNs using an area-measure of risk of physical durability: proof of concept of the Risk Index

Poyer, S.; Akiko Tangena, J.-A.; Mechan, F.; Worges, M.; Sternberg, E.; Koenker, H.; Fornadel, C.; Kilian, A.

2026-05-24 public and global health 10.64898/2026.05.21.26353786 medRxiv
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Background: The lifespan of insecticide-treated nets (ITNs) varies widely across settings, reflecting both intrinsic product characteristics and external factors related to use, care, and environment. While the resistance to damage (RD) score captures intrinsic product durability, there is no standardized metric to quantify contextual risks. This study presents a proof of concept for the Risk Index (RI), a composite measure of site-level risk factors for ITN physical durability and survival. Methods: We conducted a secondary analysis of durability monitoring data from 44 sites across 15 countries in sub-Saharan Africa, covering 14 ITN products. The RI was calculated as a weighted composite of 12 indicators spanning net handling, net care attitudes, and use environment. Associations between RI and median ITN survival were assessed using weighted linear regression and multivariable mixed-effects models adjusting for RD score, with country included as a random effect. Results: RI scores ranged from 25.1 to 83.7 across study sites. In bivariable analysis, a 10-point decrease in RI was associated with a 4.0-month increase in median ITN survival (95% CI: 1.7-6.3; p=0.001). In multivariable analysis adjusting for RD, this association remained significant but attenuated to 2.2 months (95% CI: 0.1-4.2; p=0.037). Independently, a 10-point increase in RD score was associated with a 3.5-month increase in survival (95% CI: 1.3-5.7; p=0.001). No interaction was observed between RI and RD. Predicted survival differed by approximately one year between the lowest- and highest-risk settings. Conclusion: The RI provides a standardized measure of contextual risk factors affecting ITN lifespan, independent of ITN product type. When used alongside a product's RD score, the RI enables improved interpretation of expected site-level variation in net performance. This combined framework offers a practical basis for incorporating behavioural and environmental risk into vector control planning and for tailoring ITN strategies to local conditions.

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Antimicrobial resistant bacteria in wastewater-irrigated Mexican soils and transfer of resistant bacteria from irrigated soils to cilantro plants

Pulami, D.; Bhati, D.; Gallego, S.; Smalla, K.; Luneberg, K.; Siebe, C.; Heyde, B.; Siemens, J.; Glaeser, S. P.

2026-05-17 microbiology 10.64898/2026.05.17.725719 medRxiv
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Agricultural fields in the Mezquital Valley, Mexico, were irrigated with untreated wastewater over several decades. Following the construction of a wastewater treatment plant (WWTP) in Atotonilco de Tula, WWTP effluent is used for irrigation. To evaluate the effects of changed irrigation, a soil incubation experiment was performed. Soils of the Mezquital Valley long-term irrigated with untreated wastewater were irrigated with WWTP influent or effluent, both unspiked and spiked with antibiotics and biocidal compounds and incubated four weeks. We investigated the effects of shifted irrigation on the abundance of cultivable total heterotrophic and resistant bacteria (RB). Additionally, RB were cultivated from Coriandrum sativum (cilantro) sown in soil of the incubation experiment. While wastewater treatment significantly reduced the bacterial abundance in effluent, spiking increased RB abundance in both wastewater types including ciprofloxacin (CIP) RB. Before wastewater addition, all soils contained cultivable RB. Irrigation increased the relative abundance of RB cultivated on Mueller Hinton (MH) agar in Leptosols and Phaeozems, compared to soils prior to wastewater addition irrespective of the water type, but not in Vertisols, suggesting the soil type rather than water qualities influenced the RB abundance. Diverse CIP RB were cultivated including strains of 14 genera of three phyla. Among those, Achromobacter spp. strains related to potentially pathogenic A. spanius originating from soil were abundant in both leaves and roots of cilantro. Our results showed that the implementation of wastewater treatment does not reduce the abundance of cultivable RB in Mezquital Valley soils and cilantro plants. Health risk associated monitoring should include long-term persistent RB colonizing plants cultivated in wastewater irrigated soils.

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Contextual Barriers and Facilitators Influencing Implementation Fidelity of School-Based Preventive Chemotherapy for Schistosomiasis: A Qualitative Study in Two Endemic Districts in the Central Region, Ghana.

Moshi, H.; Msugupakulya, B. J.; Vahedi, M.; Glozah, F. N.

2026-05-04 public and global health 10.64898/2026.04.27.26351652 medRxiv
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BackgroundSchistosomiasis remains a significant neglected tropical disease of public health concern, particularly in Sub-Saharan African countries, including Ghana. For decades, school-based preventive chemotherapy (PC) has been the mainstay of schistosomiasis elimination in Ghana; however, implementation fidelity across districts falls below WHO recommendations, leading to persistent transmission. This study explores contextual factors that influence the implementation fidelity of school-based preventive chemotherapy for schistosomiasis in endemic districts. MethodsA phenomenological qualitative study design using a maximum-variation purposive sampling technique was conducted in two endemic districts (Gomoa East and Awutu Senya East) in Ghana, with 21 participants, six key informant interviews with district Neglected Tropical Diseases (NTDs) coordinators and School Health Education Program (SHEP) coordinators, and 15 in-depth interviews with head teachers and SHEP teachers. Recruitment of participants and data collection were conducted from 20/06/2025 to 30/07/2025 using semi-structured interview techniques and were thematically analyzed in NVivo version 15, guided by Braun & Clarke (2006). The thematic analysis blended inductive and deductive coding techniques; inductive allowed themes to emerge from the data, while deductive was guided by Damschroder et al. (2022) Consolidated Framework for Implementation Research (CFIR), and Carroll et al. (2007), a framework for implementation fidelity. ResultsImplementation fidelity was shaped by the interplay of sociocultural, organizational, and health system factors. Key barriers included socio-cultural beliefs and perceptions on treatment uptake, drug-related fears and adverse reactions, logistical constraints and resource limitations, lack of training and incentives for frontline implementers, inadequate community sensitization and engagement, and gaps in coverage and adherence to program protocols. Conversely, fidelity was much better in situations where awareness had been raised, the community was effectively engaged, frontline implementers were motivated, and collaboration was strong among the health and education sectors, suggesting that high fidelity can be achieved through a systemic response. ConclusionImplementation fidelity of school-based preventive chemotherapy is a context-dependent, system-driven process shaped by the complex interaction of socio-cultural and structural factors. Moving forward, to enhance fidelity and achieve sustained schistosomiasis control requires a shift toward a community-centered delivery approach that emphasizes community sensitization and engagement, reliable logistical support, effective training and motivation for frontline implementers, and intersectoral collaboration.

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Quaternary ammonium compounds (QACs), QAC resistance genes, and QAC tolerant bacteria in livestock and human waste streams

Lennartz, S.; Aigbekaen, O. E.; Jahraus, A.; Siemens, J.; Mulder, I.; Glaeser, S. P.

2026-05-17 microbiology 10.64898/2026.05.17.725718 medRxiv
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Quaternary ammonium compounds (QACs) are high production volume biocidal compounds increasingly scrutinized for their potential to promote antimicrobial resistance spread. This study compared the release of QACs, QAC resistance indicator genes (qacE/qacE{Delta}1), and QAC tolerant bacteria from livestock and human waste streams into the environment. Five livestock farms with on-farm biogas plants (BGPs), a rural and an urban municipal wastewater treatment plant (WWTP) were studied in parallel. In WWTPs, <1% of incoming QACs were discharged with treated wastewater but 10-20% were transferred to sewage sludge. QAC concentrations in sewage sludge far exceeded those in raw and digested manure. The qacE/qacE{Delta}1 genes were detected in all samples with a higher relative abundance in solid than liquid samples. Relative abundances of QAC tolerant fast growing heterotrophic bacteria cultivated under high nutrient conditions at 37{degrees}C were higher in human than livestock waste streams. Providencia and Pseudomonas dominated the cultivated QAC tolerant bacteria in both systems but showed higher QAC tolerance when originating from human waste streams. Additionally, Enterobacteriaceae with higher QAC tolerance were cultivated from human waste streams. Most QAC tolerant strains carried antibiotic resistances without strong system differences. Only few strains carried the qacE/qacE{Delta}1 gene indicating that other mechanisms must be responsible for the increased QAC tolerance. In conclusion, QACs, qacE/qacE{Delta}1, and viable QAC tolerant bacteria including potential pathogenic bacteria were released from livestock and human waste streams into the environment with highest abundances in a post-pandemic sewage sludge sample. Highlights- QACs most abundant in human waste streams, especially biosolids - Higher relative abundance of QAC tolerant bacteria in human waste streams - Pseudomonas and Providencia dominated QAC tolerant bacteria in both waste streams - Enterobacteriaceae with higher QAC tolerance abundant in human waste streams - Most QAC tolerant strains carried additional antibiotic resistances Environmental implicationMunicipal wastewater treatment plants (WWTPs) and livestock farms are hotspots for antimicrobial resistance (AMR) propagation. We compared the simultaneous occurrence of quaternary ammonium compounds (QACs), resistance genes (RGs), QAC-tolerant bacteria, and their multidrug-resistance status in livestock and human waste streams. QACs, indicators of QAC tolerance and AMR occurred in both systems but were higher in WWTPs, especially sewage sludge. Our findings highlight the need for prudent disinfectant use and enhanced waste treatments to reduce the risks of spreading micropollutants, pathogens, and AMR via organic fertilizers or treated wastewater recycled in circular agricultural practice.

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Prevalence and drivers of nitrogen-related limitation of phytoplankton growth across space and time in Norwegian lakes

Rohrlack, T.

2026-05-08 ecology 10.64898/2026.05.06.723322 medRxiv
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The prevalence of nitrogen limitation and nitrogen-phosphorus co-limitation (henceforth referred to as nitrogen-related limitation) in Norwegian lakes and their relationships with atmospheric nitrogen deposition, climate, dissolved organic matter (DOM), and catchment characteristics were assessed across space and time. Routine monitoring data from 1,529 lakes in the national Vannmiljo database were analyzed for two multi-year periods (1995-2009 and 2010-2025). Limitation was inferred using the molar NO--N/TP ratio as an indicator of dissolved inorganic nitrogen availability. Nitrogen-related limitation was widespread in both periods and exhibited strong regional structure, with highest prevalence in northern regions and lowest prevalence in southwestern Norway. Overall prevalence increased from 31% to 38% between periods, with significant increases in western regions. Regional-scale models identified climate, forest cover, DOM, agriculture, and atmospheric nitrogen deposition as predictors of limitation probability, whereas study period per se and bog/peatland cover were not significant. At the local scale, atmospheric nitrogen deposition and DOM were the only consistent predictors, with substantially lower explanatory power than at the regional scale. These results indicate that large-scale environmental gradients play a major role in shaping nutrient stoichiometry in Norwegian lakes. Because the monitoring dataset primarily represents lakes affected by human activities, the findings are particularly relevant for water management. The widespread occurrence of nitrogen-related limitation suggests that nitrogen availability may influence phytoplankton growth in many systems and that dual-nutrient management strategies addressing both nitrogen and phosphorus may be required in many regions.

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Characterization of two lytic bacteriophages isolated from urban surface water in Romania targeting multidrug-resistant Escherichia coli

Dragomir, R. I.; Fertig, T. E.; Bleotu, C.; Chifiriuc, M. C.; Barbu, I. C.

2026-05-12 microbiology 10.64898/2026.05.08.723789 medRxiv
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BackgroundThe global rise of multidrug-resistant (MDR) bacteria represents a critical public health threat, and Romania ranks amongst the most affected countries in Europe. As conventional therapy increasingly fails, bacteriophage therapy has re-emerged as a promising alternative to antibiotics. Urban rivers, contaminated with resistant bacterial strains, represent an underexplored and accessible reservoir for the isolation of lytic phages with therapeutic potential. MethodsTwo bacteriophages, 17M_Ec17_D and 22C_Ec22_D, were isolated from the Dambovita River, Bucharest, Romania, using MDR E. coli as host bacteria. Phage characterization included plaque morphology, transmission electron microscopy, and host range assessment by spot assay against 30 MDR E. coli isolates. Whole genome sequencing was performed on Illumina MiSeq and Oxford Nanopore Technologies MinION platforms, followed by bioinformatic analysis including taxonomic classification, lifestyle prediction, and functional annotation. ResultsBoth phages formed clear plaques and were classified as Kayfunavirus (17M_Ec17_D, Podoviridae-like) and Kagunavirus (22C_Ec22_D, Siphoviridae-like) with nucleotide similarities of 89.2% and 71.4% to their closest relatives, respectively, suggesting both are candidates for novel species. Host range analysis revealed lytic activity against 13% and 10% of tested MDR isolates, with complementary infection profiles. Genomic analysis confirmed a strictly lytic lifestyle for both phages, supported by the presence of holin and spanin genes and the absence of lysogenic modules, antibiotic resistance genes, and virulence factors. ConclusionsTo the best of our knowledge, this is the first study conducted in Romania to isolate and genomically characterize lytic bacteriophages targeting MDR E. coli. The characterized phages represent safe therapeutic candidates whose complementary host ranges suggest potential application as part of phage cocktail to broaden antimicrobial coverage against MDR infections.

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Towards the reliable use of aerial eDNA for ecosystem monitoring

Sokal, N.; Urbez-Torres, J. R.; Da Ros, L.

2026-05-21 genomics 10.64898/2026.05.19.726284 medRxiv
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Evidence supporting the use of airborne eDNA for biodiversity studies and ecosystem monitoring is growing. The promise of wide-area population dynamics data for downstream applications in targeted monitoring of pests and pathogens for agriculture and rare species for conservation is appealing; however, several technical challenges persist. Here, we focused on the development of a comprehensive dataset to facilitate assay development and accelerate the use of aerial sampling for species detection. Year-round metabarcoding data was generated using bacterial, fungal, plant, and arthropod primer sets and resulted in relative abundance estimates for 4,960 amplicon sequence variants (ASVs), 1,748 ASVs of which were assigned to a minimum taxonomic level of genus (bacteria, fungi, plants) or class (arthropods). Sequence diversity assessments and seasonal clustering based on presence/absence detection patterns were performed for individual ASVs, while discerning quantitative changes in seasonal abundance required grouping ASVs to at least the genus level. Examination of the technical aspects of metabarcoding suggested that the use of subsampling allows for consistent detection of genera with relative abundance values above 2 %, even when samples have varying sequencing depths. Sequencing depth was the primary determinate for detecting sporadic and/or rare ASVs. Sampler comparisons, common sources of variation, and the benefits of barcoding regional species to supplement the existing taxonomic databases were discussed. Insufficient knowledge of sampler coverage area for the different organism types was identified as a limitation to the deployment of aerial monitoring networks. Considerations for further aerial metabarcoding efforts are suggested based on our experimental findings. ImportanceOur study deals directly with the generation, analysis and limitations of airborne eDNA metabarcoding data for re-use by the broader environmental research community. This includes timing of seasonal detection for possible genera of interest across multiple kingdoms, including bacteria, fungi, plants and animals (specifically arthropods), and support for the generation of local databases to assess the current limitations of universal primers for species/genus taxonomic resolution. With regards to methodology, it continues to build upon established best practices for airborne eDNA collection in areas such as sub-sampling and sampling replicates, sampler type and sequencing depth. To accelerate possible uptake and application of the data, we provide the identified ASVs and their seasonal relative abundances as a resource.

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Variable fluid mechanics explain why static efficacy tests overestimate sanitizer performance against Listeria

Jiao, Y.; Baker, J.; Slaughter, C.; Daeschel, D.; Snyder, A. B.

2026-05-13 microbiology 10.64898/2026.05.13.724842 medRxiv
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Pathogen cross-contamination during food production is primarily controlled through environmental sanitation. However, sanitizer efficacy is often studied in bench-scale experiments that poorly approximate the fluid dynamics of sanitization and limits our understanding of commercial sanitization efficacy. This study paired computational fluid dynamics (CFD) estimates of shear stress with experimental measurements of Listeria innocua reduction on stainless steel following treatment with 100 ppm hypochlorite sanitizer. At the pilot-scale, sanitizer spray manually applied by researchers achieved a 2.6 {+/-} 0.4 log CFU/surface reduction; however, microbial reduction from manual operation of sanitizer spray equipment differed significantly between researchers (p < 0.05). Microbial reduction varied by location following stationary, bench-scale spray application of sanitizer for 3 s. The greatest reduction was at the point of sanitizer spray impingement (7.5 {+/-} 0.5 log CFU/surface) and directly adjacent to the impingement point (6.4 {+/-} 0.7 log CFU/surface) where shear stress was the highest. Significantly less microbial reduction (0.4 {+/-} 0.1 log CFU/surface) occurred where shear stress was lowest in the fluid-film of sanitizer running down from the impingement point (p < 0.05). Static submersion of inoculated coupons in sanitizer for 3 s resulted in a log reduction of 2.3 {+/-} 0.1 log CFU/surface. Discrepancies between bench-scale spraying, pilot-scale spraying, and submerged coupons demonstrate the need for sanitizer efficacy testing under realistic conditions to better estimate the risk reduction achieved through sanitation programs. IMPORTANCESanitation is critical for controlling pathogen cross-contamination during food production. These findings highlight the limitations of traditional approaches to sanitizer efficacy testing, not because they are invalid, but because they do not reflect the level of microbial reduction typically achieved in application. We demonstrate that these differences in outcomes are attributable to fluid dynamics and exposure, which are not well approximated in submerged coupon experiments. Accurate estimation of microbial reduction from sanitizer application is needed to guide food safety policy decisions. For example, overestimation of the risk reduction conferred by sanitizer treatment may result in food safety policies that neglect other sources of microbial reduction within sanitation programs.

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Dynamic Exchange of Bacteria and Carbapenem Resistance Genes between Sewer Biofilms and Wastewater

Warren, E.; Brazelton, W. J.; Fusco, S.; VanDerslice, J.; Benson, L. S.; Tanner, W.; Weidhaas, J.

2026-05-21 microbiology 10.64898/2026.05.20.726639 medRxiv
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Sewer biofilms represent dynamic interfaces for exchange of bacteria and antibiotic resistance genes between biofilms and the overlying wastewater. Using inline, biofilm reactors, the movement of bacteria and 16S rRNA and carbapenemase genes (blaKPC, blaVIM, blaNDM, blaOXA-48-like, and blaIMP) between wastewater and sewer biofilms was investigated. Established, complex biofilms without these {beta}-lactamase (bla) genes, absorbed resistant bacteria within two minutes of exposure to high concentrations of resistant cultures in lab settings. Carbapenem-resistant organisms from these high-concentration source biofilms transferred to downstream biofilms over 60 minutes of representative sewer shear flows. Mass balances of bacteria and genes in biofilms versus wastewater under representative shear flow showed that biofilms exposed to resistant cultures contributed more to the wastewater than to the downstream biofilms. In field studies, established, complex biofilms without target carbapenem-resistant bacteria and genes from wastewater within hours and then stabilized between 2 to 15 days, not varying by more than 0.5 MPN/cm2 or 0.5 log gene copies (GC)/cm2. In contrast, metagenomic profiles of the bacterial community species continued to change up to 21 days. Established biofilms with resistant bacteria and genes exposed to tertiary-treated wastewater without target carbapenemase genes or meropenem antibiotics did not lose resistant genes or bacteria over nine days of exposure (i.e., < 1 log GC/cm2 reduction). Results show that sewer biofilms contribute to the resistance-gene signal found in sewer wastewater by absorbing and releasing bacteria and genes. Consideration of sewer biofilm dynamics is essential for more accurately interpreting wastewater bacterial concentrations in wastewater-based epidemiology studies. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=77 SRC="FIGDIR/small/726639v1_ufig1.gif" ALT="Figure 1"> View larger version (27K): org.highwire.dtl.DTLVardef@19f6ce0org.highwire.dtl.DTLVardef@1a507c8org.highwire.dtl.DTLVardef@1a2013dorg.highwire.dtl.DTLVardef@ff8613_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Biodiversity effects of beaver activity in a semi-natural enclosure revealed by eDNA

Hanfling, B.; Griffiths, N. P.; Macarthur, J. A.; Morrisey, B.; Svobodova, D.; Pritchard, V. L.; Tree, A.; Gaywood, M. J.

2026-05-16 ecology 10.64898/2026.05.15.725411 medRxiv
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O_LIEnvironmental DNA (eDNA) metabarcoding is an emerging tool for biodiversity assessment in freshwater systems, offering high-resolution insights into community composition. Here, we apply eDNA metabarcoding to evaluate the ecological impacts of Eurasian beaver (Castor fiber) activity within a seminatural enclosure in the Scottish Highlands. C_LIO_LIWe collected seasonal water samples from nine sites, six influenced by beaver dams and three control sites with no evidence of beaver engineering, across a 40-hectare enclosure. Samples were analysed for vertebrate and macroinvertebrate diversity using established 12S and COI markers. C_LIO_LIVertebrate alpha diversity did not differ significantly between beaver and control sites, likely reflecting the small spatial scale and low species richness of upland Scottish streams. However, community composition differed significantly between treatments, especially for fish (PERMANOVA, R2 = 0.55, P < 0.001), with beaver-influenced sites dominated by three-spined stickleback and control sites by brown trout. Macroinvertebrate communities showed a 78% increase in gamma diversity in beaver-modified habitats relative to controls. Species composition varied strongly with beaver presence (PERMANOVA, R2 = 0.29, P < 0.001), likely due to the creation of lentic-lotic mosaics and associated microhabitat diversity. Seasonal variation was significant in both taxonomic groups, with the lowest species richness and highest community dispersion observed in summer, probably reflecting hydrological and temperature-driven dynamics in eDNA production and transport. C_LIO_LIOur findings reinforce previous evidence that beaver dam-building activity enhances beta diversity in headwater systems. Additionally, we demonstrate that eDNA metabarcoding is a sensitive method for detecting spatial patterns in freshwater biodiversity associated with these activities at scales ranging from tens to hundreds of meters. These approaches could inform future monitoring strategies aligned with landscape-scale beaver management and reintroductions. C_LI

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Wastewater and colloidal extracts of wastewater-irrigated soils select for resistant Acinetobacter baylyi beyond what measured antibiotic concentrations predict

Axtmann, K.; Paffenholz, C.; Auerhammer, A.; Michel-Farias, A.-K.; Heyde, B. J.; Coppers, L. M.; Braun, M.; Kappenberg, A.; Mulder, I.; Brueggen, S.; Siebe, C.; Amelung, W.; Siemens, J.; Bierbaum, G.

2026-05-13 microbiology 10.64898/2026.05.12.724625 medRxiv
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Numerous studies have shown that the abundance of antibiotic-resistant bacteria (ARBs) or antibiotic-resistance genes (ARGs) in soil increases after irrigation with wastewater. However, it is unclear whether this increase is due to the selection effects of pharmaceutical residues in the irrigation water or the continuous introduction of ARBs and ARGs with the wastewater. Further, it is unclear how the binding of antibiotics to natural colloids (1-1000 nm) affects their biological effects compared to truly dissolved substances (< 1 nm). We conducted competition experiments with resistant and susceptible Acinetobacter baylyi BD413 strains in wastewater, as well as in colloidal and truly dissolved extracts of soils irrigated with wastewater. Although the concentrations of our six target antibiotics were far below the measured minimum selective concentrations of the tested strains, we demonstrate that the resistant strain was favored in the wastewater and the colloidal extracts. In contrast, the truly dissolved fractions exhibited weaker and more variable selective effects. A non-targeted analysis revealed the presence of 82 additional substances in our extracts, including further antibiotics, pesticides, and different non-antibiotic drugs that may influence the selection of our resistant A. baylyi BD413 strain. Our findings suggest that antibiotic resistance is selected for in wastewater and wastewater-irrigated soils. This cannot be explained by antibiotic concentrations alone, but may also arise from the effects of complex mixtures of co-occurring contaminants, particularly those associated with colloidal particles.

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Bridging Policy and Practice: Parents and Caregivers Experiences with the Interim Canada Dental Benefit in Canada

Olatosi, O. O.; Baltus, T. H. L.; Mittermuller, B.-A.; Fux, S.; Monayao, A.; Lee, J.; Menon, A.; Yerex, K.; Goubran, S.; Schroth, R. J.

2026-05-15 public and global health 10.64898/2026.05.12.26352368 medRxiv
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Background: Access to dental care remains a significant challenge for many children in Canada, particularly among low-income and underserved populations. The Interim Canada Dental Benefit (CDB), introduced in October 2022, aimed to reduce financial barriers to oral health care for children under 12 years of age while the Canadian Dental Care Plan (CDCP) was being developed. While emerging evidence has examined program uptake, limited qualitative research has explored parents and caregivers experiences with the Interim CDB. Objective: This study aimed to explore parents and caregivers experiences with the Interim CDB in Manitoba, Canada, including awareness, access, perceived benefits, challenges, and recommendations for program improvement. Methods: A qualitative descriptive study was conducted using semi-structured interviews with 30 parents and caregivers of children under 12 years of age. Participants were recruited primarily through community dental clinics. Interviews were conducted between July 2023 and February 2024, audio-recorded, and transcribed verbatim. Data were analyzed using inductive thematic analysis to identify key themes and subthemes. Results: Seven interconnected themes were identified: (1) limited and uneven awareness of the Interim CDB; (2) inadequate and inequitable communication strategies; (3) barriers to accessing the benefit, including misconceptions about eligibility and complex application processes; (4) dental providers as key facilitators of access; (5) financial relief and improved access to care; (6) gaps in coverage and ongoing financial strain; and (7) participant-driven recommendations for improvement. While the benefit was widely perceived as reducing financial barriers and enabling access to care, challenges related to awareness, communication, and adequacy of coverage limited its overall effectiveness. Participants emphasized the need for improved communication from government, simplified application processes, expanded eligibility, and increased financial support. Conclusion: The Interim CDB represents an important step toward improving access to dental care for children in Canada. However, this study highlights critical implementation gaps related to awareness, accessibility, and coverage. Addressing these challenges will be essential to ensuring the success of the new CDCP and advancing equitable access to oral health care.

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Sanitation Practices and Child Health Outcomes in Gulu District: The Moderating Effect of Climate, Age, and Water Access.

IDIBA, Y.; Nsereko, N. D.; Barakagira, A.

2026-06-01 occupational and environmental health 10.64898/2026.05.29.26354417 medRxiv
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Abstract Background: The sanitation crisis poses a significant public health risk, leading to diseases like diarrhea, cholera, and typhoid, which impede children's health and development in developing countries like Uganda. Improving sanitation infrastructure is crucial for safeguarding child health and future generations. However, the link between sanitation and children's health is complex, influenced by various factors. This investigation in Gulu scrutinizes the correlation between sanitation practices and child well-being, considering moderating factors such as age, climate, and consistent water accessibility. Methods: The study used a convergent parallel design with equal priority. The Social Ecological Model, Social Learning Theory, and Diffusion of Innovations Model guided it. Researchers collected data from 10 health facilities and 317 households, using purposive and simple random sampling. They used sampling proportions proportional to village size within strata. The researcher analyzed quantitative data using SPSS with factor analysis, structural equation modeling, and multivariate analysis. To analyze qualitative data, they used DQA Minor Lite software, which facilitated thematic analysis. Results: The finding shows 56.8% of households had low socio-economic status. Sanitation was poor; 24.9% household had improved latrines, 20.5% had handwashing facilities with soap, and 68.1% used basic anal cleansing. For nutrition, 38.5% of children were malnourished by MUAC; by Z-scores, 28.7% were stunted, 16.4% underweight, 13.6% wasted. Diarrhea affected 62% of children. Climate worsened sanitation: 48.3% had latrines collapse from floods, and 63.4% of waterborne diseases occurred in both dry and wet seasons. Moderation analysis on childhood diarrhea shows that sociocultural factors ({beta} = -0.20, p < 0.001), sanitation ({beta} = -0.15, p < 0.001), and health system response ({beta} = -0.18, p < 0.001) reduced diarrhea. Climate change increased risk ({beta} = 0.15, p < 0.001) and moderated sanitation effects ({beta} = 0.01, p < 0.05). Models explained 10-14% variance. Age and water access had no moderating effect. While childhood malnutrition shows that sociocultural factors ({beta} = -0.43, p < 0.001) and health system response ({beta} = -0.13, p < 0.001) reduced malnutrition. Sanitation had no effect ({beta} = 0.01, p > 0.05). Age increased malnutrition risk ({beta} = 0.28, p < 0.01) and moderated sociocultural effects ({beta} = 0.16, p < 0.001), but not sanitation. The model explained 21% variance, R{superscript 2} = 0.21, p < 0.001. Conclusion: Sociocultural improvements and health system responses lower both diarrhea and malnutrition. Climate worsens diarrhea and alters sanitation's impact. Age worsens malnutrition and changes sociocultural effects. These findings are valuable for policymakers, healthcare professionals, and researchers

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Socioeconomic Inequalities and Environmental Determinants of Child Undernutrition in Cambodia: An Analysis of the 2021-22 Demographic and Health Survey

Um, S.; Dany, L.; Sakha, S.; Pav, P.; Phan, C.; Chamroen, P.; Sieng, C.; Heng, S.

2026-05-08 public and global health 10.64898/2026.05.06.26352583 medRxiv
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Childhood undernutrition remains a major public health problem in low- and middle-income countries, including Cambodia, despite improvements in economic development and health services. To better understand child undernutrition in Cambodia, we examined the prevalence, socio-economic and environmental determinants, and associated factors of stunting, wasting, and underweight among children aged 0-59 months using the 2021-22 Cambodia Demographic and Health Survey (CDHS). This study included 3,821 weighted children aged 0-59 months. The prevalence of stunting, wasting, and underweight was 20.4%, 9.4%, and 15.9%, respectively. The highest burden of stunting was observed among children aged 12-23 months. Children from the poorest households consistently contributed the largest proportion of undernutrition cases across all three outcomes. After adjusting for other variables, children aged 12-23 months had higher odds of stunting compared with infants (AOR = 2.64; 95% CI: 1.87-3.74). Male children had increased odds of stunting (AOR = 1.33; 95% CI: 1.10-1.61), wasting (AOR = 1.35; 95% CI: 1.01-1.82), and underweight (AOR = 1.28; 95% CI: 1.02-1.59). Children from richer (AOR = 0.55; 95% CI: 0.31-0.95) and richest households (AOR = 0.33; 95% CI: 0.16-0.68) had lower odds of stunting. Maternal secondary or higher education was associated with lower odds of wasting (AOR = 0.49; 95% CI: 0.28-0.84) and underweight (AOR = 0.51; 95% CI: 0.32-0.79). Access to bottled water and digital connectivity were also protective against undernutrition. Conversely, poor household environmental conditions were associated with increased odds of undernutrition. Interaction analysis showed a stronger protective effect of maternal education among wealthier households, indicating a synergistic effect of socioeconomic advantage. Childhood undernutrition remains highly prevalent in Cambodia. Public health interventions and policies should prioritize improving complementary feeding practices, reducing socioeconomic inequalities, and strengthening multisectoral actions across nutrition, education, WASH, and social protection systems.